If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 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'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 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=> 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ), 'gf_id' => 'HOM05D000587', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000587' ), 'data_identifier' => 'HOM05D000587', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000587', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '947', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00350' => 'bna', 'A03p28760' => 'bna', 'A04p21460' => 'bna', 'A05p24070' => 'bna', 'A06p17140' => 'bna', 'A07p18850' => 'bna', 'A07p42350' => 'bna', 'A08p23590' => 'bna', 'A08p29090' => 'bna', 'A08p35860' => 'bna', 'A09p19760' => 'bna', 'A09p32450' => 'bna', 'A09p66720' => 'bna', 'A10p05440' => 'bna', 'Aa31LG1G7960' => 'aar', 'Aa31LG4G6770' => 'aar', 'Aa31LG5G7900' => 'aar', 'Aa31LG6G15890' => 'aar', 'Aa31LG6G8240' => 'aar', 'Aa31LG7G5220' => 'aar', 'Aa31LG9G15030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2609' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2787' => 'aag', 'Actinidia04748' => 'ach', 'Actinidia07144' => 'ach', 'Actinidia11619' => 'ach', 'Actinidia17978' => 'ach', 'Actinidia23171' => 'ach', 'Actinidia23842' => 'ach', 'Actinidia24109' => 'ach', 'Actinidia26115' => 'ach', 'Actinidia29548' => 'ach', 'Actinidia34491' => 'ach', 'Actinidia37899' => 'ach', 'Ah.02g123720' => 'amhyb', 'Ah.02g131180' => 'amhyb', 'Ah.02g131190' => 'amhyb', 'Ah.03g135180' => 'amhyb', 'Ah.03g140030' => 'amhyb', 'Ah.08g215490' => 'amhyb', 'Ah.10g026660' => 'amhyb', 'Ah.10g026670' => 'amhyb', 'Ah.10g027810' => 'amhyb', 'Ah.11g042720' => 'amhyb', 'Ah.12g064240' => 'amhyb', 'AL1G16910' => 'aly', 'AL1G34120' => 'aly', 'AL1G48460' => 'aly', 'AL2G36810' => 'aly', 'AL4G21780' => 'aly', 'AL4G25340' => 'aly', 'AL6G43440' => 'aly', 'AL7G11410' => 'aly', 'AL85U10020' => 'aly', 'AL8G19070' => 'aly', 'Aqoxy1G01221' => 'aox', 'Aqoxy3G04354' => 'aox', 'Aqoxy4G02385' => 'aox', 'Aqoxy5G00916' => 'aox', 'Aqoxy6G00410' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1M71LS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.67HF21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H3MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.845W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CY88' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5R9D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV2BLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRN88C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG250G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FJX2BC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I3M5SU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA7PGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J71BBN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJWN6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQKG7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9BXJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X76JWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDX0XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJZ8JH' => 'arhy', 'AT1G06890' => 'ath', 'AT1G21070' => 'ath', 'AT1G34020' => 'ath', 'AT1G76670' => 'ath', 'AT2G28315' => 'ath', 'AT2G30460' => 'ath', 'AT4G09810' => 'ath', 'AT4G39390' => 'ath', 'AT5G42420' => 'ath', 'ATR0048G017' => 'atr', 'ATR0605G203' => 'atr', 'ATR1127G012' => 'atr', 'ATR1127G236' => 'atr', 'Atru.chr1.2510' => 'acertr', 'Atru.chr13.10' => 'acertr', 'Atru.chr13.2007' => 'acertr', 'Atru.chr4.736' => 'acertr', 'Atru.chr4.747' => 'acertr', 'Atru.chr8.1047' => 'acertr', 'AUR62003646' => 'cqu', 'AUR62005765' => 'cqu', 'AUR62008213' => 'cqu', 'AUR62009731' => 'cqu', 'AUR62017956' => 'cqu', 'AUR62022782' => 'cqu', 'AUR62024918' => 'cqu', 'AUR62028792' => 'cqu', 'AUR62030626' => 'cqu', 'AUR62030966' => 'cqu', 'AUR62035195' => 'cqu', 'AUR62036214' => 'cqu', 'AUR62042530' => 'cqu', 'AUR62043340' => 'cqu', 'BcaB01g02774' => 'bca', 'BcaB02g06766' => 'bca', 'BcaB03g12287' => 'bca', 'BcaB03g12836' => 'bca', 'BcaB03g13684' => 'bca', 'BcaB06g28202' => 'bca', 'BcaB07g31074' => 'bca', 'BcaB07g32100' => 'bca', 'BcaB07g33024' => 'bca', 'BcaC01g00288' => 'bca', 'BcaC01g04700' => 'bca', 'BcaC02g07722' => 'bca', 'BcaC02g08191' => 'bca', 'BcaC02g10763' => 'bca', 'BcaC04g21994' => 'bca', 'BcaC05g24657' => 'bca', 'BcaC05g26015' => 'bca', 'BcaC05g27778' => 'bca', 'BcaC07g39075' => 'bca', 'BcaC07g42041' => 'bca', 'BcaC07g42042' => 'bca', 'BcaC07g42542' => 'bca', 'BcaC07g42546' => 'bca', 'BcaC08g43823' => 'bca', 'BcaC08g47179' => 'bca', 'BcaC08g47223' => 'bca', 'BcaNung01263' => 'bca', 'BcaNung01264' => 'bca', 'BcaNung05432' => 'bca', 'BolC1t00053H' => 'bol', 'BolC3t15787H' => 'bol', 'BolC3t20039H' => 'bol', 'BolC4t23817H' => 'bol', 'BolC4t24045H' => 'bol', 'BolC4t27267H' => 'bol', 'BolC4t27907H' => 'bol', 'BolC5t29274H' => 'bol', 'BolC5t30679H' => 'bol', 'BolC5t32515H' => 'bol', 'BolC6t36343H' => 'bol', 'BolC6t40117H' => 'bol', 'BolC8t47067H' => 'bol', 'BolC8t49688H' => 'bol', 'BolC8t49691H' => 'bol', 'BolC8t52623H' => 'bol', 'BolC9t55401H' => 'bol', 'BraA01t00043Z' => 'bra', 'BraA03t12074Z' => 'bra', 'BraA04t17712Z' => 'bra', 'BraA05t21287Z' => 'bra', 'BraA06t24817Z' => 'bra', 'BraA07t29592Z' => 'bra', 'BraA07t31762Z' => 'bra', 'BraA08t34316Z' => 'bra', 'BraA08t34845Z' => 'bra', 'BraA08t35493Z' => 'bra', 'BraA09t37581Z' => 'bra', 'BraA09t38787Z' => 'bra', 'BraA09t42011Z' => 'bra', 'BraA10t42808Z' => 'bra', 'C01p00500' => 'bna', 'C03p34780' => 'bna', 'C03p77840' => 'bna', 'C04p23210' => 'bna', 'C04p25380' => 'bna', 'C04p57450' => 'bna', 'C05p05020' => 'bna', 'C05p19790' => 'bna', 'C05p37740' => 'bna', 'C06p12070' => 'bna', 'C06p50910' => 'bna', 'C08p02710' => 'bna', 'C08p20590' => 'bna', 'C08p50950' => 'bna', 'C09p25060' => 'bna', 'CAN.G208.45' => 'can', 'CAN.G24.10' => 'can', 'CAN.G26.48' => 'can', 'CAN.G312.13' => 'can', 'CAN.G495.14' => 'can', 'CAN.G631.37' => 'can', 'CAN.G860.5' => 'can', 'CAN.G874.80' => 'can', 'CANSAT01G2618' => 'cansat', 'CANSAT25G1489' => 'cansat', 'CANSAT25G2105' => 'cansat', 'CANSAT25G3568' => 'cansat', 'CANSAT54G0199' => 'cansat', 'CANSAT54G1320' => 'cansat', 'CANSAT56G0391' => 'cansat', 'CANSAT56G4368' => 'cansat', 'CARHR006560' => 'chi', 'CARHR021520' => 'chi', 'CARHR033400' => 'chi', 'CARHR033410' => 'chi', 'CARHR070230' => 'chi', 'CARHR121240' => 'chi', 'CARHR123900' => 'chi', 'CARHR247320' => 'chi', 'CARHR285130' => 'chi', 'Carub.0001s0618' => 'cru', 'Carub.0001s2053' => 'cru', 'Carub.0001s3210' => 'cru', 'Carub.0002s2357' => 'cru', 'Carub.0004s0921' => 'cru', 'Carub.0006s2826' => 'cru', 'Carub.0007s0131' => 'cru', 'Carub.0008s0671' => 'cru', 'Ca_10665_v3' => 'car', 'Ca_16880_v3' => 'car', 'Ca_16881_v3' => 'car', 'Ca_16904_v3' => 'car', 'Ca_17680_v3' => 'car', 'Ca_19271_v3' => 'car', 'Ca_24330_v3' => 'car', 'Ca_29604_v3' => 'car', 'CBR_g12762' => 'cbr', 'CBR_g23094' => 'cbr', 'CBR_g38189' => 'cbr', 'Cc01_g10980' => 'ccan', 'Cc01_g15260' => 'ccan', 'Cc02_g05450' => 'ccan', 'Cc07_g16590' => 'ccan', 'Cc10_g00040' => 'ccan', 'Cc10_g15210' => 'ccan', 'Cc10_g15240' => 'ccan', 'CDE02G0287' => 'cde', 'CDE02G0723' => 'cde', 'CDE02G1078' => 'cde', 'CDE04G2009' => 'cde', 'CDE04G2532' => 'cde', 'CDE06G1970' => 'cde', 'CDE08G1669' => 'cde', 'CDE11G0232' => 'cde', 'CDE11G0527' => 'cde', 'CDE12G0301' => 'cde', 'Cfa001220' => 'cfa', 'Cfa002780' => 'cfa', 'Cfa011303' => 'cfa', 'Cfa014179' => 'cfa', 'Cfa018283' => 'cfa', 'Cfa018284' => 'cfa', 'Ciclev10001709m.g' => 'ccl', 'Ciclev10001769m.g' => 'ccl', 'Ciclev10001866m.g' => 'ccl', 'Ciclev10012072m.g' => 'ccl', 'Ciclev10013865m.g' => 'ccl', 'Ciclev10026818m.g' => 'ccl', 'Ciclev10027192m.g' => 'ccl', 'Ciclev10028754m.g' => 'ccl', 'CiPaw.01G305100' => 'cil', 'CiPaw.03G132200' => 'cil', 'CiPaw.04G089300' => 'cil', 'CiPaw.06G112600' => 'cil', 'CiPaw.07G129100' => 'cil', 'CiPaw.08G079700' => 'cil', 'CiPaw.13G064600' => 'cil', 'CiPaw.13G115400' => 'cil', 'CiPaw.13G115500' => 'cil', 'CiPaw.14G051100' => 'cil', 'CiPaw.14G082300' => 'cil', 'CiPaw.15G012600' => 'cil', 'CiPaw.16G008500' => 'cil', 'ClCG01G015900' => 'cla', 'ClCG02G010660' => 'cla', 'ClCG02G021220' => 'cla', 'ClCG03G000080' => 'cla', 'ClCG08G007390' => 'cla', 'ClCG11G019230' => 'cla', 'COL.COLO4_02842' => 'col', 'COL.COLO4_11205' => 'col', 'COL.COLO4_13787' => 'col', 'COL.COLO4_16223' => 'col', 'COL.COLO4_18318' => 'col', 'COL.COLO4_22369' => 'col', 'Cpa.g.c34479' => 'cpa', 'Cpa.g.sc2.302' => 'cpa', 'Cpa.g.sc26.85' => 'cpa', 'Cpa.g.sc279.3' => 'cpa', 'Cpa.g.sc36.84' => 'cpa', 'Cpa.g.sc72.22' => 'cpa', 'Cre02.g144300' => 'cre', 'Cre11.g479950' => 'cre', 'Cre15.g641266' => 'cre', 'Cre17.g710850' => 'cre', 'Cre18.g748947' => 'cre', 'CsaV3_1G004750' => 'csa', 'CsaV3_1G004760' => 'csa', 'CsaV3_4G037820' => 'csa', 'CsaV3_6G005030' => 'csa', 'CsaV3_6G009850' => 'csa', 'CsaV3_6G013970' => 'csa', 'CsaV3_6G042180' => 'csa', 'CSS0003301' => 'camsi', 'CSS0003635' => 'camsi', 'CSS0005820' => 'camsi', 'CSS0008354' => 'camsi', 'CSS0014355' => 'camsi', 'CSS0020806' => 'camsi', 'CSS0022753' => 'camsi', 'CSS0030142' => 'camsi', 'CSS0030188' => 'camsi', 'CSS0031379' => 'camsi', 'CSS0039035' => 'camsi', 'CSS0042219' => 'camsi', 'CSS0045931' => 'camsi', 'CSS0046705' => 'camsi', 'CSS0046776' => 'camsi', 'DCAR_004799' => 'dca', 'DCAR_013346' => 'dca', 'DCAR_016933' => 'dca', 'DCAR_018800' => 'dca', 'DCAR_022999' => 'dca', 'Dinv12275' => 'din', 'Dinv19461' => 'din', 'Dinv21840' => 'din', 'Dinv25898' => 'din', 'Dinv26053' => 'din', 'Dinv28726' => 'din', 'Dinv35499' => 'din', 'Dinv41033' => 'din', 'Dinv41851' => 'din', 'Duzib052G0183' => 'dzi', 'Duzib093G0723' => 'dzi', 'Duzib116G0553' => 'dzi', 'Duzib132G0879' => 'dzi', 'Duzib147G1127' => 'dzi', 'Duzib150G0470' => 'dzi', 'Duzib150G0980' => 'dzi', 'Duzib168G0156' => 'dzi', 'Duzib168G2334' => 'dzi', 'Duzib170G0350' => 'dzi', 'Duzib170G1076' => 'dzi', 'Duzib187G1894' => 'dzi', 'Duzib248G0783' => 'dzi', 'Duzib264G0356' => 'dzi', 'ECA232G5050' => 'eca', 'ECA233G3922' => 'eca', 'ECA238G1804' => 'eca', 'ECA246G4229' => 'eca', 'ECA247G0950' => 'eca', 'ECA248G1250' => 'eca', 'EL10Ac1g01802' => 'bvu', 'EL10Ac2g02626' => 'bvu', 'EL10Ac5g10750' => 'bvu', 'EL10Ac6g13191' => 'bvu', 'EL10Ac6g15222' => 'bvu', 'EL10Ac7g15853' => 'bvu', 'EL10Ac9g22547' => 'bvu', 'Eucgr.B02510' => 'egr', 'Eucgr.B04024' => 'egr', 'Eucgr.C01813' => 'egr', 'Eucgr.E01586' => 'egr', 'Eucgr.F01961' => 'egr', 'Eucgr.F03638' => 'egr', 'Eucgr.F04190' => 'egr', 'Eucgr.I00300' => 'egr', 'Eucgr.L00902' => 'egr', 'Eucgr.L02160' => 'egr', 'FAN03G2137' => 'fan', 'FAN04G2490' => 'fan', 'FAN06G0904' => 'fan', 'FAN08G1782' => 'fan', 'FAN10G0127' => 'fan', 'FAN10G2801' => 'fan', 'FAN11G1272' => 'fan', 'FAN11G1642' => 'fan', 'FAN13G0095' => 'fan', 'FAN15G0995' => 'fan', 'FAN16G1513' => 'fan', 'FAN16G2907' => 'fan', 'FAN18G4523' => 'fan', 'FAN19G1035' => 'fan', 'FAN21G1516' => 'fan', 'FAN21G3581' => 'fan', 'FAN23G0516' => 'fan', 'FAN24G2418' => 'fan', 'FAN25G0772' => 'fan', 'FAN26G3297' => 'fan', 'FAN27G0131' => 'fan', 'FAN27G2889' => 'fan', 'FAN28G1281' => 'fan', 'FvH4_1g23140' => 'fve', 'FvH4_2g17260' => 'fve', 'FvH4_3g31910' => 'fve', 'FvH4_3g40350' => 'fve', 'FvH4_5g26900' => 'fve', 'FvH4_7g25720' => 'fve', 'Glyma.01G245500' => 'gma', 'Glyma.02G079100' => 'gma', 'Glyma.04G218200' => 'gma', 'Glyma.04G221100' => 'gma', 'Glyma.04G221200' => 'gma', 'Glyma.05G185700' => 'gma', 'Glyma.06G144600' => 'gma', 'Glyma.06G144700' => 'gma', 'Glyma.06G147800' => 'gma', 'Glyma.08G143800' => 'gma', 'Glyma.10G221700' => 'gma', 'Glyma.11G000200' => 'gma', 'Glyma.12G174700' => 'gma', 'Glyma.13G324900' => 'gma', 'Glyma.16G163500' => 'gma', 'Gohir.A02G136500' => 'ghi', 'Gohir.A03G032600' => 'ghi', 'Gohir.A03G168900' => 'ghi', 'Gohir.A04G110500' => 'ghi', 'Gohir.A05G104100' => 'ghi', 'Gohir.A05G246300' => 'ghi', 'Gohir.A05G270900' => 'ghi', 'Gohir.A08G000044' => 'ghi', 'Gohir.A08G199000' => 'ghi', 'Gohir.A08G204000' => 'ghi', 'Gohir.A11G054200' => 'ghi', 'Gohir.A12G011666' => 'ghi', 'Gohir.A12G011732' => 'ghi', 'Gohir.D02G192100' => 'ghi', 'Gohir.D03G047200' => 'ghi', 'Gohir.D03G135800' => 'ghi', 'Gohir.D04G150800' => 'ghi', 'Gohir.D05G103900' => 'ghi', 'Gohir.D05G247800' => 'ghi', 'Gohir.D05G273000' => 'ghi', 'Gohir.D08G007700' => 'ghi', 'Gohir.D08G216400' => 'ghi', 'Gohir.D08G221300' => 'ghi', 'Gohir.D11G057700' => 'ghi', 'Gohir.D12G011760' => 'ghi', 'Gohir.D12G012100' => 'ghi', 'Gorai.003G048300' => 'gra', 'Gorai.003G142900' => 'gra', 'Gorai.004G000900' => 'gra', 'Gorai.004G230300' => 'gra', 'Gorai.004G235000' => 'gra', 'Gorai.005G214900' => 'gra', 'Gorai.007G062900' => 'gra', 'Gorai.008G012200' => 'gra', 'Gorai.009G108100' => 'gra', 'Gorai.009G258600' => 'gra', 'Gorai.009G286100' => 'gra', 'Gorai.012G137400' => 'gra', 'GSVIVG01013474001' => 'vvi', 'GSVIVG01022262001' => 'vvi', 'GSVIVG01024574001' => 'vvi', 'GSVIVG01025202001' => 'vvi', 'GSVIVG01032677001' => 'vvi', 'GSVIVG01034581001' => 'vvi', 'HanXRQChr01g0000751' => 'han', 'HanXRQChr05g0162381' => 'han', 'HanXRQChr06g0181671' => 'han', 'HanXRQChr07g0196971' => 'han', 'HanXRQChr07g0204361' => 'han', 'HanXRQChr08g0216991' => 'han', 'HanXRQChr08g0230691' => 'han', 'HanXRQChr09g0259261' => 'han', 'HanXRQChr10g0278631' => 'han', 'HanXRQChr11g0320221' => 'han', 'HanXRQChr14g0452681' => 'han', 'Haze_17342' => 'cav', 'Haze_17803' => 'cav', 'Haze_17815' => 'cav', 'Haze_22904' => 'cav', 'Haze_23801' => 'cav', 'Haze_23805' => 'cav', 'Haze_24460' => 'cav', 'Haze_25076' => 'cav', 'Hma1.2p1_0119F.1_g056920' => 'hma', 'Hma1.2p1_0265F.1_g106310' => 'hma', 'Hma1.2p1_0271F.1_g108620' => 'hma', 'Hma1.2p1_0289F.1_g114590' => 'hma', 'Hma1.2p1_1269F.1_g271600' => 'hma', 'HPP92_007874' => 'vpl', 'HPP92_007889' => 'vpl', 'HPP92_012661' => 'vpl', 'HPP92_014284' => 'vpl', 'HPP92_015432' => 'vpl', 'HPP92_017795' => 'vpl', 'HPP92_019589' => 'vpl', 'HPP92_020405' => 'vpl', 'HPP92_022858' => 'vpl', 'HPP92_024495' => 'vpl', 'HPP92_026842' => 'vpl', 'HPP92_028457' => 'vpl', 'HPP92_028706' => 'vpl', 'HPP92_028716' => 'vpl', 'Hund01809' => 'sun', 'Hund03521' => 'sun', 'Hund05887' => 'sun', 'Hund08161' => 'sun', 'Hund09435' => 'sun', 'Hund13454' => 'sun', 'Hund15826' => 'sun', 'Hund18970' => 'sun', 'Hund19628' => 'sun', 'Hund25251' => 'sun', 'Lalb_Chr01g0004361' => 'lal', 'Lalb_Chr01g0008231' => 'lal', 'Lalb_Chr01g0011211' => 'lal', 'Lalb_Chr03g0033741' => 'lal', 'Lalb_Chr03g0035531' => 'lal', 'Lalb_Chr08g0238771' => 'lal', 'Lalb_Chr08g0239011' => 'lal', 'Lalb_Chr08g0239021' => 'lal', 'Lalb_Chr08g0239031' => 'lal', 'Lalb_Chr11g0067951' => 'lal', 'Lalb_Chr11g0067961' => 'lal', 'Lalb_Chr11g0068151' => 'lal', 'Lalb_Chr14g0374601' => 'lal', 'Lalb_Chr19g0130111' => 'lal', 'Lalb_Chr19g0131821' => 'lal', 'Lalb_Chr19g0137161' => 'lal', 'Lalb_Chr23g0272281' => 'lal', 'Lalb_Chr23g0272421' => 'lal', 'Lalb_Chr23g0272441' => 'lal', 'Lj1A292T14' => 'lonja', 'Lj1A302T23' => 'lonja', 'Lj1C121T5' => 'lonja', 'Lj1g0012549' => 'lja', 'Lj1g0014880' => 'lja', 'Lj1g0020743' => 'lja', 'Lj1P302T21' => 'lonja', 'Lj2A1024G55' => 'lonja', 'Lj2A568G44' => 'lonja', 'Lj3g0021482' => 'lja', 'Lj3g0026079' => 'lja', 'Lj4C861G5' => 'lonja', 'Lj4g0020759' => 'lja', 'Lj5A169T94' => 'lonja', 'Lj5g0001761' => 'lja', 'Lj5g0008621' => 'lja', 'Lj7A382T69' => 'lonja', 'Lj8A55T87' => 'lonja', 'Lj9A409G92' => 'lonja', 'Lsat_1_v5_gn_2_100441' => 'lsa', 'Lsat_1_v5_gn_2_2320' => 'lsa', 'Lsat_1_v5_gn_3_50101' => 'lsa', 'Lsat_1_v5_gn_6_101561' => 'lsa', 'Lsat_1_v5_gn_8_109281' => 'lsa', 'Lsat_1_v5_gn_8_25701' => 'lsa', 'Lsat_1_v5_gn_9_13980' => 'lsa', 'Lsat_1_v5_gn_9_42160' => 'lsa', 'Manes.02G183200' => 'mes', 'Manes.02G210700' => 'mes', 'Manes.03G095800' => 'mes', 'Manes.04G019600' => 'mes', 'Manes.05G113800' => 'mes', 'Manes.11G147000' => 'mes', 'Manes.12G145000' => 'mes', 'Manes.13G086800' => 'mes', 'Manes.15G112500' => 'mes', 'Manes.18G094800' => 'mes', 'Manes.18G139100' => 'mes', 'Mapoly0011s0147' => 'mpo', 'Mapoly0024s0134' => 'mpo', 'Mapoly0052s0010' => 'mpo', 'MBI01_g32844_MAGBIO' => 'mbi', 'MBI07_g26025_MAGBIO' => 'mbi', 'MBI07_g38392_MAGBIO' => 'mbi', 'MBI07_g44336_MAGBIO' => 'mbi', 'MBI09_g31923_MAGBIO' => 'mbi', 'MBI10_g26208_MAGBIO' => 'mbi', 'MBI11_g19486_MAGBIO' => 'mbi', 'MBI15_g08967_MAGBIO' => 'mbi', 'MBI15_g45938_MAGBIO' => 'mbi', 'MBI16_g28876_MAGBIO' => 'mbi', 'MBI16_g42561_MAGBIO' => 'mbi', 'MBI16_g47894_MAGBIO' => 'mbi', 'MCO03G318' => 'mco', 'MCO05G689' => 'mco', 'MCO11G271' => 'mco', 'MCO11G786' => 'mco', 'MD01G1014300' => 'mdo', 'MD01G1164500' => 'mdo', 'MD03G1052900' => 'mdo', 'MD03G1120000' => 'mdo', 'MD05G1033300' => 'mdo', 'MD05G1151400' => 'mdo', 'MD07G1232100' => 'mdo', 'MD10G1034100' => 'mdo', 'MD10G1145600' => 'mdo', 'MD11G1054700' => 'mdo', 'MD11G1138100' => 'mdo', 'MD15G1336400' => 'mdo', 'Medtr1291s0010' => 'mtr', 'Medtr1g026590' => 'mtr', 'Medtr1g098240' => 'mtr', 'Medtr2g094640' => 'mtr', 'Medtr3g094260' => 'mtr', 'Medtr3g094270' => 'mtr', 'Medtr3g095130' => 'mtr', 'Medtr4g058860' => 'mtr', 'Medtr5g004620' => 'mtr', 'Medtr8g092190' => 'mtr', 'MELO3C007456.2' => 'cme', 'MELO3C013471.2' => 'cme', 'MELO3C017076.2' => 'cme', 'MELO3C019980.2' => 'cme', 'MELO3C020486.2' => 'cme', 'MELO3C025779.2' => 'cme', 'Migut.C00326' => 'egut', 'Migut.C00382' => 'egut', 'Migut.D00822' => 'egut', 'Migut.D02237' => 'egut', 'Migut.F01255' => 'egut', 'Migut.H02452' => 'egut', 'Migut.L00059' => 'egut', 'Migut.N02589' => 'egut', 'Migut.N02952' => 'egut', 'Migut.N03005' => 'egut', 'MSTRG.12707' => 'ama', 'MSTRG.176' => 'ama', 'MSTRG.17788' => 'ama', 'MSTRG.17915' => 'ama', 'MSTRG.22064' => 'ama', 'MSTRG.22107' => 'ama', 'MSTRG.24535' => 'ama', 'MSTRG.2521' => 'ama', 'MSTRG.8373' => 'ama', 'MSTRG.976' => 'ama', 'Nitab4.5_0000002g0200' => 'nta', 'Nitab4.5_0000002g0210' => 'nta', 'Nitab4.5_0000002g0290' => 'nta', 'Nitab4.5_0000181g0140' => 'nta', 'Nitab4.5_0000184g0080' => 'nta', 'Nitab4.5_0000602g0080' => 'nta', 'Nitab4.5_0000872g0020' => 'nta', 'Nitab4.5_0001309g0140' => 'nta', 'Nitab4.5_0001939g0050' => 'nta', 'Nitab4.5_0002091g0090' => 'nta', 'Nitab4.5_0002759g0120' => 'nta', 'Nitab4.5_0003423g0070' => 'nta', 'Nitab4.5_0003747g0020' => 'nta', 'Nitab4.5_0004270g0020' => 'nta', 'Nitab4.5_0004599g0070' => 'nta', 'Nitab4.5_0005547g0010' => 'nta', 'Nitab4.5_0013741g0010' => 'nta', 'Nn2g10328' => 'nnu', 'Nn2g10824' => 'nnu', 'Nn2g13119' => 'nnu', 'Nn5g26866' => 'nnu', 'Nn5g28894' => 'nnu', 'Nn5g31084' => 'nnu', 'Nn6g31523' => 'nnu', 'Nn8g38848' => 'nnu', 'Oeu000727.1' => 'oeu', 'Oeu001284.1' => 'oeu', 'Oeu001977.1' => 'oeu', 'Oeu002068.1' => 'oeu', 'Oeu011378.1' => 'oeu', 'Oeu017622.1' => 'oeu', 'Oeu044162.1' => 'oeu', 'Oeu051282.1' => 'oeu', 'Oeu064680.1' => 'oeu', 'Os01g0167500' => 'osa', 'Os01g0823200' => 'osa', 'Os02g0614500' => 'osa', 'Os02g0628200' => 'osa', 'Os05g0168700' => 'osa', 'Os05g0215800' => 'osa', 'Os06g0506200' => 'osa', 'Os07g0581000' => 'osa', 'Os10g0479700' => 'osa', 'Os12g0154000' => 'osa', 'Os12g0154600' => 'osa', 'Peaxi162Scf00025g00346' => 'pax', 'Peaxi162Scf00064g01526' => 'pax', 'Peaxi162Scf00095g01216' => 'pax', 'Peaxi162Scf00160g01768' => 'pax', 'Peaxi162Scf00270g00024' => 'pax', 'Peaxi162Scf00360g00312' => 'pax', 'Peaxi162Scf00390g00330' => 'pax', 'Peaxi162Scf00739g00322' => 'pax', 'PGR004G2633' => 'pgr', 'PGR031G1715' => 'pgr', 'PGR044G1092' => 'pgr', 'PGR083G1388' => 'pgr', 'PGR102G0311' => 'pgr', 'PGR102G0851' => 'pgr', 'PGSC0003DMG400008085' => 'stu', 'PGSC0003DMG400016649' => 'stu', 'PGSC0003DMG400018800' => 'stu', 'PGSC0003DMG400019697' => 'stu', 'PGSC0003DMG400021033' => 'stu', 'PGSC0003DMG400030466' => 'stu', 'PGSC0003DMG402029307' => 'stu', 'Phvul.002G054900' => 'pvu', 'Phvul.002G266800' => 'pvu', 'Phvul.004G090700' => 'pvu', 'Phvul.005G134200' => 'pvu', 'Phvul.007G083300' => 'pvu', 'Phvul.009G138400' => 'pvu', 'Phvul.009G141300' => 'pvu', 'Phvul.009G141500' => 'pvu', 'Potri.002G000500' => 'ptr', 'Potri.002G064700' => 'ptr', 'Potri.004G211900' => 'ptr', 'Potri.005G086700' => 'ptr', 'Potri.005G196500' => 'ptr', 'Potri.005G260300' => 'ptr', 'Potri.007G077900' => 'ptr', 'Potri.009G011100' => 'ptr', 'Potri.013G154800' => 'ptr', 'Potri.019G128900' => 'ptr', 'Pp3c11_19960' => 'ppa', 'Pp3c16_5840' => 'ppa', 'Pp3c16_5870' => 'ppa', 'Pp3c27_3920' => 'ppa', 'Pp3c27_3930' => 'ppa', 'Pp3c5_16710' => 'ppa', 'Pp3c5_6580' => 'ppa', 'Pp3c7_5360' => 'ppa', 'PRCOL_00005019' => 'pco', 'PRCOL_00006198' => 'pco', 'PRCOL_00006215' => 'pco', 'Prupe.2G262200' => 'ppe', 'Prupe.6G042100' => 'ppe', 'Prupe.6G103500' => 'ppe', 'Prupe.6G168000' => 'ppe', 'Prupe.8G040500' => 'ppe', 'Prupe.8G183900' => 'ppe', 'Prupe.8G184000' => 'ppe', 'Prupe.8G184100' => 'ppe', 'Psat5g066120' => 'psa', 'Psat5g067600' => 'psa', 'Psat5g067760' => 'psa', 'Psat6g000720' => 'psa', 'Psat6g071280' => 'psa', 'Psat6g190720' => 'psa', 'Psat7g049680' => 'psa', 'Psat7g192480' => 'psa', 'PSO017G2620' => 'pso', 'PSO017G2822' => 'pso', 'PSO135G0909' => 'pso', 'PSO170G0182' => 'pso', 'PSO170G0454' => 'pso', 'PSO170G3825' => 'pso', 'PSO339G2734' => 'pso', 'PSO384G2086' => 'pso', 'PSO384G3686' => 'pso', 'PSO700G0285' => 'pso', 'QL01p021844' => 'qlo', 'QL01p023637' => 'qlo', 'QL01p025019' => 'qlo', 'QL02p016583' => 'qlo', 'QL02p037561' => 'qlo', 'QL02p038077' => 'qlo', 'QL06p031468' => 'qlo', 'QL08p064614' => 'qlo', 'QL11p052047' => 'qlo', 'QL11p057163' => 'qlo', 'QL11p057589' => 'qlo', 'RcHm_v2.0_Chr1g0371941' => 'rch', 'RcHm_v2.0_Chr2g0117861' => 'rch', 'RcHm_v2.0_Chr5g0006941' => 'rch', 'RcHm_v2.0_Chr5g0007051' => 'rch', 'RcHm_v2.0_Chr5g0007201' => 'rch', 'RcHm_v2.0_Chr5g0007361' => 'rch', 'RcHm_v2.0_Chr5g0058681' => 'rch', 'RcHm_v2.0_Chr5g0072751' => 'rch', 'RcHm_v2.0_Chr6g0281761' => 'rch', 'RcHm_v2.0_Chr7g0217841' => 'rch', 'RcHm_v2.0_Chr7g0217851' => 'rch', 'RcHm_v2.0_Chr7g0217941' => 'rch', 'Rhsim01G0242700' => 'rsi', 'Rhsim07G0258400' => 'rsi', 'Rhsim08G0004900' => 'rsi', 'Rhsim11G0087600' => 'rsi', 'Rhsim13G0060100' => 'rsi', 'Rhsim13G0219300' => 'rsi', 'Sabra02G0000700' => 'sbr', 'Sabra02G0051600' => 'sbr', 'Sabra04G0143300' => 'sbr', 'Sabra05G0071400' => 'sbr', 'Sabra05G0201200' => 'sbr', 'Sabra07G0065600' => 'sbr', 'Sabra09G0007000' => 'sbr', 'Sabra13G0124700' => 'sbr', 'Sabra19G0061300' => 'sbr', 'Sabra19G0126600' => 'sbr', 'SalBow1G1582' => 'sbo', 'SalBow2G1295' => 'sbo', 'SalBow2G2981' => 'sbo', 'SalBow3G1276' => 'sbo', 'SalBow3G1489' => 'sbo', 'SalBow5G1227' => 'sbo', 'SalBow6G0080' => 'sbo', 'SalBow6G2355' => 'sbo', 'SalBow7G3378' => 'sbo', 'SalBow7G4018' => 'sbo', 'Sc07g0001600' => 'sci', 'Sc10g0002970' => 'sci', 'Sc11g0001850' => 'sci', 'Sc12g0000120' => 'sci', 'Sc15g0001530' => 'sci', 'Sc15g0003980' => 'sci', 'Sc20g0002270' => 'sci', 'Sed0001849' => 'sed', 'Sed0008966' => 'sed', 'Sed0013950' => 'sed', 'Sed0014707' => 'sed', 'Sed0017111' => 'sed', 'Sed0017581' => 'sed', 'Sed0021967' => 'sed', 'Sed0023949' => 'sed', 'Sed0026023' => 'sed', 'SEGI_03777' => 'sgi', 'SEGI_09802' => 'sgi', 'SEGI_15458' => 'sgi', 'SEGI_20325' => 'sgi', 'SEGI_36229' => 'sgi', 'SGA_v2.0_scaffold116G32269' => 'sas', 'SGA_v2.0_scaffold127G34025' => 'sas', 'SGA_v2.0_scaffold133G34638' => 'sas', 'SGA_v2.0_scaffold19G08919' => 'sas', 'SGA_v2.0_scaffold20G09291' => 'sas', 'SGA_v2.0_scaffold25G11026' => 'sas', 'SGA_v2.0_scaffold2G01271' => 'sas', 'SGA_v2.0_scaffold54G19464' => 'sas', 'SGA_v2.0_scaffold619G53220' => 'sas', 'SHI19249' => 'shi', 'SMO116G0447' => 'smo', 'SMO118G0325' => 'smo', 'SMO147G0419' => 'smo', 'SMO165G0171' => 'smo', 'Solyc04g051500.3' => 'sly', 'Solyc06g010160.2' => 'sly', 'Solyc06g049070.3' => 'sly', 'Solyc06g082500.3' => 'sly', 'Solyc11g069540.3' => 'sly', 'Solyc12g056640.2' => 'sly', 'Solyc12g095790.2' => 'sly', 'Sopen04g022880' => 'spe', 'Sopen06g004980' => 'spe', 'Sopen06g015430' => 'spe', 'Sopen06g033880' => 'spe', 'Sopen11g028250' => 'spe', 'Sopen12g029300' => 'spe', 'Sopen12g031690' => 'spe', 'Sp1g05600' => 'spa', 'Sp1g18740' => 'spa', 'Sp1g29280' => 'spa', 'Sp5g31830' => 'spa', 'Sp7g07940' => 'spa', 'Sp7g36470' => 'spa', 'TAR369G1046' => 'tar', 'TAR376G0032' => 'tar', 'TAR381G0808' => 'tar', 'TAR623G1415' => 'tar', 'TAR625G1218' => 'tar', 'TAR628G0532' => 'tar', 'TAR628G0888' => 'tar', 'TAR633G0040' => 'tar', 'THA.LOC104800787' => 'tha', 'THA.LOC104803354' => 'tha', 'THA.LOC104806040' => 'tha', 'THA.LOC104806766' => 'tha', 'THA.LOC104807731' => 'tha', 'THA.LOC104809209' => 'tha', 'THA.LOC104812028' => 'tha', 'THA.LOC104813089' => 'tha', 'THA.LOC104815744' => 'tha', 'THA.LOC104815823' => 'tha', 'THA.LOC104824833' => 'tha', 'THA.LOC104825212' => 'tha', 'THA.LOC104826265' => 'tha', 'THA.LOC109117148' => 'tha', 'Thecc.01G116300' => 'tca', 'Thecc.02G150100' => 'tca', 'Thecc.08G096400' => 'tca', 'Thecc.08G159100' => 'tca', 'Thecc.09G342600' => 'tca', 'Thecc.09G363100' => 'tca', 'Thhalv10003241m.g' => 'esa', 'Thhalv10008030m.g' => 'esa', 'Thhalv10008081m.g' => 'esa', 'Thhalv10008144m.g' => 'esa', 'Thhalv10016866m.g' => 'esa', 'Thhalv10016887m.g' => 'esa', 'Thhalv10018800m.g' => 'esa', 'Thhalv10025667m.g' => 'esa', 'Thhalv10029422m.g' => 'esa', 'TPR.G16103' => 'tpr', 'TPR.G16140' => 'tpr', 'TPR.G17027' => 'tpr', 'TPR.G21603' => 'tpr', 'TPR.G2241' => 'tpr', 'TPR.G26389' => 'tpr', 'TPR.G6141' => 'tpr', 'TPR.G8115' => 'tpr', 'TPR.G8273' => 'tpr', 'TWI12G1127' => 'twi', 'TWI31G1235' => 'twi', 'TWI31G1438' => 'twi', 'TWI75G1140' => 'twi', 'TWI75G1256' => 'twi', 'TWI79G0089' => 'twi', 'TWI79G1562' => 'twi', 'unitig_0.g2073' => 'ugi', 'unitig_37.g12902' => 'ugi', 'unitig_578.g16103' => 'ugi', 'unitig_61.g26285' => 'ugi', 'unitig_62.g23923' => 'ugi', 'unitig_747.g21543' => 'ugi', 'unitig_749.g13862' => 'ugi', 'unitig_899.g14922' => 'ugi', 'vmacro01492' => 'vma', 'vmacro02883' => 'vma', 'vmacro03205' => 'vma', 'vmacro04437' => 'vma', 'vmacro14638' => 'vma', 'vmacro18644' => 'vma', 'VMungo0251G2862' => 'vmu', 'VMungo0464G1248' => 'vmu', 'VMungo0720G3054' => 'vmu', 'VMungo1080G0189' => 'vmu', 'VMungo1215G0243' => 'vmu', 'VMungo1309G1189' => 'vmu', 'VMungo1309G2186' => 'vmu', 'VMungo1309G2944' => 'vmu', 'Zm00001eb045670' => 'zma', 'Zm00001eb077180' => 'zma', 'Zm00001eb093490' => 'zma', 'Zm00001eb107700' => 'zma', 'Zm00001eb108220' => 'zma', 'Zm00001eb123260' => 'zma', 'Zm00001eb163560' => 'zma', 'Zm00001eb195980' => 'zma', 'Zm00001eb221640' => 'zma', 'Zm00001eb247710' => 'zma', 'Zm00001eb281960' => 'zma', 'Zm00001eb325570' => 'zma', 'Zm00001eb326180' => 'zma', 'Zm00001eb336390' => 'zma', 'Zm00001eb345900' => 'zma', 'Zm00001eb426730' => 'zma' ) $gf_id = 'HOM05D000587' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000587' ) $data_identifier = 'HOM05D000587' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 11, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 29, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 13, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 6, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 14, 'sun' => (int) 10, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 12, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426730' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1